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Update modules subworkflows#283

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atrigila merged 10 commits into
nf-core:devfrom
atrigila:update_modules_subworkflows
May 19, 2026
Merged

Update modules subworkflows#283
atrigila merged 10 commits into
nf-core:devfrom
atrigila:update_modules_subworkflows

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Update all nf-core modules and subworkflows.

@atrigila atrigila marked this pull request as ready for review May 9, 2026 20:56
@atrigila atrigila requested a review from LouisLeNezet May 19, 2026 16:16
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Warning

Newer version of the nf-core template is available.

Your pipeline is using an old version of the nf-core template: 3.5.2.
Please update your pipeline to the latest version.

For more documentation on how to update your pipeline, please see the nf-core documentation and Synchronisation documentation.

@LouisLeNezet LouisLeNezet left a comment

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They seems to be some issue with the tests snapshots.
However we can fix it in another PR by standardizing all the names and reordering them properly so that nf-test stop reordering them all the times.
This often mess up the git diff and make it complicate to compare.

@atrigila atrigila merged commit 019cf80 into nf-core:dev May 19, 2026
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3 participants